/cemt/methylation/A36000_3_lane_gembs

BACK

SAMPLE A36000_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26858856 19630691 73.09 %
NonRefCpG 277074 169204 61.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36000_3_lane_gembs_coverage_refCpG.png ./IMG//A36000_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36000_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36000_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36000_3_lane_gembs_quality_refcpg.png ./IMG//A36000_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36000_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11598480 22.06 % 7593938 17.77 % 129449 24.78 % 74357 19.46 %
Intermediate (0.3-0.7) 13177260 25.06 % 9786533 22.90 % 140269 26.85 % 93294 24.41 %
Methylated (0.7-1) 27810121 52.89 % 25363197 59.34 % 252702 48.37 % 214514 56.13 %
Median Methylation 0.730 0.790 0.680 0.760