/cemt/A36006_3_lane_gembs

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SAMPLE A36006_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1094480350 100.00 % 547240175 100.00 % 547240175 100.00 %
General Reads 1074812158 98.20 % 539514351 98.59 % 535297807 97.82 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 62493 0.01 % 31369 0.01 % 31124 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19605699 1.79 % 7694455 1.41 % 11911244 2.18 %
Bisulfite_reads C2T 546746571 49.95 % 274398072 50.14 % 272348499 49.77 %
Bisulfite_reads G2A 528128080 48.25 % 265147648 48.45 % 262980432 48.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 431019356
Average Unique 78.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 54672895030 39.65 % 23989112193 34.79 % 30683782837 44.50 %
Base Counts Overall C 13686208073 9.92 % 612907973 0.89 % 13073300100 18.96 %
Base Counts Overall G 13767311156 9.98 % 13224930731 19.18 % 542380425 0.79 %
Base Counts Overall T 54241645537 39.33 % 30576874926 44.34 % 23664770611 34.32 %
Base Counts Overall N 1536464304 1.11 % 548436227 0.80 % 988028077 1.43 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9933430485121587
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 487091523



Mapping Quality

Mapping Quality Histogram
A36006_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36006_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C6HN2ANXX_6_1
C415FANXX_4_1
C6HN2ANXX_5_1