/cemt/mapping_coverage/A36006_3_lane_gembs
BACK
SAMPLE A36006_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1068467302 |
100% |
116043805494 |
100% |
| Mapped |
1053747584 |
98.62 % |
114203840744 |
98.41 % |
| Passed |
853877674 |
79.92 % |
89220101994 |
76.88 % |
| NotPassed |
199869910 |
18.71 % |
24983738750 |
21.53 % |
| |
|
|
|
|
| LowMAPQ |
130635378 |
12.23 % |
16329422250 |
14.07 % |
| MateUnmapped |
14719718 |
1.38 % |
1839964750 |
1.59 % |
| Duplicate |
6361242 |
0.60 % |
795155250 |
0.69 % |
| BadOrientation |
116 |
0.00 % |
14500 |
0.00 % |
| LargeInsertSize |
9906 |
0.00 % |
1238250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
62863268 |
5.88 % |
7857908500 |
6.77 % |
| Unmapped |
14719718 |
1.38 % |
1839964750 |
1.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
106723225750 |
100% |
| Passed |
84977830738 |
79.62 % |
| Trimmed |
3795652427 |
3.56 % |
| Clipped |
353509972 |
0.33 % |
| Overlapping |
17149613784 |
16.07 % |
| LowQuality |
446618829 |
0.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |