/cemt/methylation/A36006_3_lane_gembs

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SAMPLE A36006_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26576870 14110964 53.09 %
NonRefCpG 308388 120656 39.12 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36006_3_lane_gembs_coverage_refCpG.png ./IMG//A36006_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36006_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36006_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36006_3_lane_gembs_quality_refcpg.png ./IMG//A36006_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36006_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11390834 22.49 % 5308929 16.08 % 174573 30.41 % 64619 20.33 %
Intermediate (0.3-0.7) 13938473 27.52 % 7683440 23.27 % 164350 28.63 % 80977 25.48 %
Methylated (0.7-1) 25326556 50.00 % 20032111 60.66 % 235123 40.96 % 172190 54.18 %
Median Methylation 0.690 0.790 0.580 0.740