/EXTERNAL BLUEPRINT/K006357_11_lane_gembs/BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300956_11

BACK

SAMPLE K006357_11_lane_gembs LANE BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300956_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1060692196 100.00 % 530346098 100.00 % 530346098 100.00 %
General Reads 1012475838 95.45 % 507348192 95.66 % 505127646 95.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 21168072 2.00 % 10596815 2.00 % 10571257 1.99 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27048286 2.55 % 12401091 2.34 % 14647195 2.76 %
Bisulfite_reads C2T 538906287 50.81 % 270048114 50.92 % 268858173 50.69 %
Bisulfite_reads G2A 494737623 46.64 % 247896893 46.74 % 246840730 46.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 424762189
Average Unique 80.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39038697308 36.08 % 15170824746 28.04 % 23867872562 44.12 %
Base Counts Overall C 14596493518 13.49 % 825004234 1.53 % 13771489284 25.46 %
Base Counts Overall G 14770346832 13.65 % 13971100663 25.83 % 799246169 1.48 %
Base Counts Overall T 38686689207 35.76 % 23578195251 43.59 % 15108493956 27.93 %
Base Counts Overall N 1098377127 1.02 % 550177102 1.02 % 548200025 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989596124683283
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 502226927



Mapping Quality

Mapping Quality Histogram
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300956_11.mapq.png



Read Length

Read Length Reads
101 530346098
101 530346098



Insert Size Plot

Insert Size Histogram
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300956_11.isize.png