/EXTERNAL BLUEPRINT/mapping_coverage/K006357_11_lane_gembs
BACK
SAMPLE K006357_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1002429034 |
100% |
87954150801 |
100% |
| Mapped |
994108845 |
99.17 % |
87113811712 |
99.04 % |
| Passed |
816934288 |
81.50 % |
69219181455 |
78.70 % |
| NotPassed |
177174557 |
17.67 % |
17894630257 |
20.35 % |
| |
|
|
|
|
| LowMAPQ |
154670496 |
15.43 % |
15621720096 |
17.76 % |
| MateUnmapped |
8320189 |
0.83 % |
840339089 |
0.96 % |
| Duplicate |
10065226 |
1.00 % |
1016587826 |
1.16 % |
| BadOrientation |
40 |
0.00 % |
4040 |
0.00 % |
| LargeInsertSize |
10152 |
0.00 % |
1025352 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12428643 |
1.24 % |
1255292943 |
1.43 % |
| Unmapped |
8320189 |
0.83 % |
840339089 |
0.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82505653660 |
100% |
| Passed |
65159996593 |
78.98 % |
| Trimmed |
3484342872 |
4.22 % |
| Clipped |
85054596 |
0.10 % |
| Overlapping |
13201417609 |
16.00 % |
| LowQuality |
574841990 |
0.70 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |