/EXTERNAL BLUEPRINT/methylation/K006357_11_lane_gembs

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SAMPLE K006357_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26672224 20920949 78.44 %
NonRefCpG 325700 158671 48.72 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006357_11_lane_gembs_coverage_refCpG.png ./IMG//K006357_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006357_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006357_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006357_11_lane_gembs_quality_refcpg.png ./IMG//K006357_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006357_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6385225 13.20 % 4774369 11.57 % 106596 18.94 % 31649 8.99 %
Intermediate (0.3-0.7) 7409358 15.32 % 5171624 12.54 % 122699 21.80 % 57279 16.28 %
Methylated (0.7-1) 34569690 71.48 % 31310874 75.89 % 333483 59.26 % 262991 74.73 %
Median Methylation 0.850 0.870 0.780 0.860