/EXTERNAL BLUEPRINT/K006383_K006413_19_lane_gembs/S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001344723_11

BACK

SAMPLE K006383_K006413_19_lane_gembs LANE S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001344723_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1192744776 100.00 % 596372388 100.00 % 596372388 100.00 %
General Reads 1138076610 95.42 % 571084344 95.76 % 566992266 95.07 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22864130 1.92 % 11462551 1.92 % 11401579 1.91 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31804036 2.67 % 13825493 2.32 % 17978543 3.01 %
Bisulfite_reads C2T 616351650 51.68 % 309300906 51.86 % 307050744 51.49 %
Bisulfite_reads G2A 544589090 45.66 % 273245989 45.82 % 271343101 45.50 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 459720993
Average Unique 77.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43134408324 35.45 % 17072579732 28.07 % 26061828592 42.84 %
Base Counts Overall C 17099824293 14.06 % 767041978 1.26 % 16332782315 26.85 %
Base Counts Overall G 17302367091 14.22 % 16549968825 27.21 % 752398266 1.24 %
Base Counts Overall T 42913589971 35.27 % 25838133709 42.48 % 17075456262 28.07 %
Base Counts Overall N 1209777473 0.99 % 602259332 0.99 % 607518141 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991394432061632
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 561287042



Mapping Quality

Mapping Quality Histogram
S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001344723_11.mapq.png



Read Length

Read Length Reads
101 596372388
101 596372388



Insert Size Plot

Insert Size Histogram
S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001344723_11.isize.png