/EXTERNAL BLUEPRINT/K006383_K006413_19_lane_gembs/S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001349850_8

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SAMPLE K006383_K006413_19_lane_gembs LANE S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001349850_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 811506096 100.00 % 405753048 100.00 % 405753048 100.00 %
General Reads 794542187 97.91 % 398807396 98.29 % 395734791 97.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3039514 0.37 % 1524682 0.38 % 1514832 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13924395 1.72 % 5420970 1.34 % 8503425 2.10 %
Bisulfite_reads C2T 409002567 50.40 % 205282439 50.59 % 203720128 50.21 %
Bisulfite_reads G2A 388579134 47.88 % 195049639 48.07 % 193529495 47.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 337260845
Average Unique 83.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32366372269 39.10 % 12427380914 30.03 % 19938991355 48.18 %
Base Counts Overall C 8694030777 10.50 % 285642568 0.69 % 8408388209 20.32 %
Base Counts Overall G 8780932339 10.61 % 8506255262 20.55 % 274677077 0.66 %
Base Counts Overall T 32084297300 38.76 % 19743191183 47.70 % 12341106117 29.82 %
Base Counts Overall N 847989107 1.02 % 424340969 1.03 % 423648138 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993143372285249
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 387532066



Mapping Quality

Mapping Quality Histogram
S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001349850_8.mapq.png



Read Length

Read Length Reads
101 405753048
101 405753048



Insert Size Plot

Insert Size Histogram
S00YAM.Bisulfite-Seq.DNA_Methylation.EGAX00001349850_8.isize.png