/EXTERNAL BLUEPRINT/mapping_coverage/K006383_K006413_19_lane_gembs
BACK
SAMPLE K006383_K006413_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1920059587 |
100% |
170100505774 |
100% |
| Mapped |
1901044904 |
99.01 % |
168180022791 |
98.87 % |
| Passed |
1557924647 |
81.14 % |
133524876834 |
78.50 % |
| NotPassed |
343120257 |
17.87 % |
34655145957 |
20.37 % |
| |
|
|
|
|
| LowMAPQ |
302433926 |
15.75 % |
30545826526 |
17.96 % |
| MateUnmapped |
19014683 |
0.99 % |
1920482983 |
1.13 % |
| Duplicate |
12576999 |
0.66 % |
1270276899 |
0.75 % |
| BadOrientation |
38 |
0.00 % |
3838 |
0.00 % |
| LargeInsertSize |
20630 |
0.00 % |
2083630 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28088664 |
1.46 % |
2836955064 |
1.67 % |
| Unmapped |
19014683 |
0.99 % |
1920482983 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
157343215620 |
100% |
| Passed |
125457288963 |
79.73 % |
| Trimmed |
6669284907 |
4.24 % |
| Clipped |
162861119 |
0.10 % |
| Overlapping |
23655477667 |
15.03 % |
| LowQuality |
1398302964 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |