/EXTERNAL BLUEPRINT/methylation/K006383_K006413_19_lane_gembs
BACK
SAMPLE K006383_K006413_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26979529 |
23588573 |
87.43 % |
| NonRefCpG |
255774 |
180779 |
70.68 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
12267932 |
23.04 % |
10942136 |
22.30 % |
110755 |
22.58 % |
77362 |
19.75 % |
| Intermediate (0.3-0.7) |
16108331 |
30.25 % |
14429938 |
29.41 % |
171760 |
35.02 % |
134456 |
34.32 % |
| Methylated (0.7-1) |
24868094 |
46.71 % |
23692085 |
48.29 % |
207959 |
42.40 % |
179960 |
45.93 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.660 |
|
0.680 |
|
0.620 |
|
0.660 |
|