/EXTERNAL BLUEPRINT/mapping_coverage/K010500_1_lane_gembs
BACK
SAMPLE K010500_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1097006659 |
100% |
95846186190 |
100% |
| Mapped |
1086096631 |
99.01 % |
94744273362 |
98.85 % |
| Passed |
854268752 |
77.87 % |
71329657583 |
74.42 % |
| NotPassed |
231827879 |
21.13 % |
23414615779 |
24.43 % |
| |
|
|
|
|
| LowMAPQ |
198239418 |
18.07 % |
20022181218 |
20.89 % |
| MateUnmapped |
10910028 |
0.99 % |
1101912828 |
1.15 % |
| Duplicate |
16713917 |
1.52 % |
1688105617 |
1.76 % |
| BadOrientation |
38 |
0.00 % |
3838 |
0.00 % |
| LargeInsertSize |
19496 |
0.00 % |
1969096 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16855010 |
1.54 % |
1702356010 |
1.78 % |
| Unmapped |
10910028 |
0.99 % |
1101912828 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86276307365 |
100% |
| Passed |
67052552557 |
77.72 % |
| Trimmed |
3600319804 |
4.17 % |
| Clipped |
132538201 |
0.15 % |
| Overlapping |
14814111581 |
17.17 % |
| LowQuality |
676785222 |
0.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |