/EXTERNAL BLUEPRINT/methylation/K010500_1_lane_gembs

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SAMPLE K010500_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26658661 20488735 76.86 %
NonRefCpG 341149 157368 46.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010500_1_lane_gembs_coverage_refCpG.png ./IMG//K010500_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010500_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010500_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010500_1_lane_gembs_quality_refcpg.png ./IMG//K010500_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010500_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6002469 12.75 % 4413244 11.20 % 108629 18.99 % 29426 8.64 %
Intermediate (0.3-0.7) 6833599 14.51 % 4533385 11.51 % 123590 21.60 % 52239 15.35 %
Methylated (0.7-1) 34255992 72.74 % 30448896 77.29 % 339856 59.41 % 258758 76.01 %
Median Methylation 0.860 0.880 0.790 0.870