/EXTERNAL BLUEPRINT/K006355_9_lane_gembs

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SAMPLE K006355_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1008225452 100.00 % 504112726 100.00 % 504112726 100.00 %
General Reads 967321658 95.94 % 485266720 96.26 % 482054938 95.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16191158 1.61 % 8113796 1.61 % 8077362 1.60 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24712636 2.45 % 10732210 2.13 % 13980426 2.77 %
Bisulfite_reads C2T 519588439 51.53 % 260659005 51.71 % 258929434 51.36 %
Bisulfite_reads G2A 463924377 46.01 % 232721511 46.16 % 231202866 45.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 396312446
Average Unique 78.62 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36890154304 35.87 % 14458420028 28.12 % 22431734276 43.62 %
Base Counts Overall C 14019835204 13.63 % 754712170 1.47 % 13265123034 25.80 %
Base Counts Overall G 14199139695 13.81 % 13468074353 26.19 % 731065342 1.42 %
Base Counts Overall T 36683452042 35.67 % 22227039385 43.23 % 14456412657 28.11 %
Base Counts Overall N 1046414859 1.02 % 511252116 0.99 % 535162743 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991609751390128
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 477744066



Mapping Quality

Mapping Quality Histogram
K006355_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006355_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
PB270313.Bisulfite-Seq.DNA_Methylation.EGAX00001290294_9