/EXTERNAL BLUEPRINT/mapping_coverage/K006355_9_lane_gembs
BACK
SAMPLE K006355_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
960642731 |
100% |
85263839592 |
100% |
| Mapped |
951322959 |
99.03 % |
84322542620 |
98.90 % |
| Passed |
771222670 |
80.28 % |
66132413431 |
77.56 % |
| NotPassed |
180100289 |
18.75 % |
18190129189 |
21.33 % |
| |
|
|
|
|
| LowMAPQ |
161084586 |
16.77 % |
16269543186 |
19.08 % |
| MateUnmapped |
9319772 |
0.97 % |
941296972 |
1.10 % |
| Duplicate |
6686439 |
0.70 % |
675330339 |
0.79 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
12620 |
0.00 % |
1274620 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12316614 |
1.28 % |
1243978014 |
1.46 % |
| Unmapped |
9319772 |
0.97 % |
941296972 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77888747821 |
100% |
| Passed |
62182313354 |
79.83 % |
| Trimmed |
3300869803 |
4.24 % |
| Clipped |
87643072 |
0.11 % |
| Overlapping |
11668691318 |
14.98 % |
| LowQuality |
649230274 |
0.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |