/EXTERNAL BLUEPRINT/methylation/K006355_9_lane_gembs

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SAMPLE K006355_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26634421 20077398 75.38 %
NonRefCpG 327158 151781 46.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006355_9_lane_gembs_coverage_refCpG.png ./IMG//K006355_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006355_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006355_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006355_9_lane_gembs_quality_refcpg.png ./IMG//K006355_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006355_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6284978 13.35 % 4496499 11.53 % 100928 18.33 % 28540 8.65 %
Intermediate (0.3-0.7) 7230930 15.35 % 4744287 12.17 % 122245 22.20 % 52722 15.97 %
Methylated (0.7-1) 33577230 71.30 % 29756169 76.30 % 327545 59.48 % 248799 75.38 %
Median Methylation 0.850 0.880 0.790 0.870