/EXTERNAL BLUEPRINT/K006352_9_lane_gembs

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SAMPLE K006352_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1027873132 100.00 % 513936566 100.00 % 513936566 100.00 %
General Reads 983271181 95.66 % 493081423 95.94 % 490189758 95.38 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17667514 1.72 % 8850580 1.72 % 8816934 1.72 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26934437 2.62 % 12004563 2.34 % 14929874 2.91 %
Bisulfite_reads C2T 522315918 50.82 % 261931827 50.97 % 260384091 50.66 %
Bisulfite_reads G2A 478622777 46.56 % 240000176 46.70 % 238622601 46.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 406557639
Average Unique 79.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37449395811 35.72 % 14677916997 28.00 % 22771478814 43.44 %
Base Counts Overall C 14455971911 13.79 % 816983644 1.56 % 13638988267 26.02 %
Base Counts Overall G 14636259950 13.96 % 13840785649 26.40 % 795474301 1.52 %
Base Counts Overall T 37235481619 35.52 % 22565309780 43.05 % 14670171839 27.99 %
Base Counts Overall N 1065950173 1.02 % 520533662 0.99 % 545416511 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990583995602876
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 485284437



Mapping Quality

Mapping Quality Histogram
K006352_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006352_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00002.Bisulfite-Seq.DNA_Methylation.EGAX00001290291_9