/EXTERNAL BLUEPRINT/mapping_coverage/K006352_9_lane_gembs
BACK
SAMPLE K006352_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
975590752 |
100% |
86034795003 |
100% |
| Mapped |
966532234 |
99.07 % |
85119884685 |
98.94 % |
| Passed |
788484369 |
80.82 % |
67137050320 |
78.03 % |
| NotPassed |
178047865 |
18.25 % |
17982834365 |
20.90 % |
| |
|
|
|
|
| LowMAPQ |
157092532 |
16.10 % |
15866345732 |
18.44 % |
| MateUnmapped |
9058518 |
0.93 % |
914910318 |
1.06 % |
| Duplicate |
7691280 |
0.79 % |
776819280 |
0.90 % |
| BadOrientation |
36 |
0.00 % |
3636 |
0.00 % |
| LargeInsertSize |
11054 |
0.00 % |
1116454 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13252963 |
1.36 % |
1338549263 |
1.56 % |
| Unmapped |
9058518 |
0.93 % |
914910318 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79632112053 |
100% |
| Passed |
63117725859 |
79.26 % |
| Trimmed |
3352873796 |
4.21 % |
| Clipped |
87255141 |
0.11 % |
| Overlapping |
12407806592 |
15.58 % |
| LowQuality |
666450665 |
0.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |