/EXTERNAL BLUEPRINT/methylation/K006352_9_lane_gembs

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SAMPLE K006352_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26527076 19507420 73.54 %
NonRefCpG 323441 144447 44.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006352_9_lane_gembs_coverage_refCpG.png ./IMG//K006352_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006352_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006352_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006352_9_lane_gembs_quality_refcpg.png ./IMG//K006352_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006352_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6520945 13.99 % 4474227 11.76 % 104953 19.40 % 29904 9.44 %
Intermediate (0.3-0.7) 7852613 16.85 % 5038527 13.24 % 125057 23.11 % 53141 16.77 %
Methylated (0.7-1) 32228093 69.16 % 28534827 75.00 % 311027 57.49 % 233861 73.79 %
Median Methylation 0.850 0.880 0.770 0.870