{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 43186161, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 38705842, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 89.63, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 56642046, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55397893, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.8, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 31353822, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 8190102, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.261215
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 44356900, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3332706, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.075134
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 31352224, 
            "distinct_read_pairs": 23430376, 
            "one_read_pair": 17444063, 
            "two_read_pair": 4517824, 
            "NRF": 0.747327, 
            "PBC1": 0.744506, 
            "PBC2": 3.861165
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 44344615, 
            "distinct_read_pairs": 41081176, 
            "one_read_pair": 38122388, 
            "two_read_pair": 2740435, 
            "NRF": 0.926407, 
            "PBC1": 0.927977, 
            "PBC2": 13.911072
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 23163720, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 23163720, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 41024194, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41024194, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 75460, 
        "Np": 0, 
        "N_opt": 75460, 
        "N_consv": 75460, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 185, 
            "corr_est_frag_len": 0.176165087449632, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1670258, 
            "argmin_corr": 1500, 
            "min_corr": 0.1514453, 
            "NSC": 1.163226, 
            "RSC": 1.586586
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.252179403545
        }, 
        "rep1-pr1": {
            "FRiP": 0.221004959303
        }, 
        "rep1-pr2": {
            "FRiP": 0.220806708075
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.202387778883
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.21154379323, 
            "auc": 0.488708182812, 
            "ch_div": 0.186996177346, 
            "elbow_pt": 2.29881698887e-66, 
            "jsd": 0.662730718787, 
            "syn_auc": 0.515028864219, 
            "syn_elbow_pt": 0.204710447752, 
            "syn_jsd": 0.346755393493
        }
    ]
}
