/EXTERNAL BLUEPRINT/mapping_coverage/K010502_1_lane_gembs
BACK
SAMPLE K010502_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
551468215 |
100% |
49707974354 |
100% |
| Mapped |
545637474 |
98.94 % |
49119069513 |
98.82 % |
| Passed |
465484129 |
84.41 % |
41023581668 |
82.53 % |
| NotPassed |
80153345 |
14.53 % |
8095487845 |
16.29 % |
| |
|
|
|
|
| LowMAPQ |
68253258 |
12.38 % |
6893579058 |
13.87 % |
| MateUnmapped |
5830741 |
1.06 % |
588904841 |
1.18 % |
| Duplicate |
945435 |
0.17 % |
95488935 |
0.19 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
2762 |
0.00 % |
278962 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10951880 |
1.99 % |
1106139880 |
2.23 % |
| Unmapped |
5830741 |
1.06 % |
588904841 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
47008935909 |
100% |
| Passed |
38448499018 |
81.79 % |
| Trimmed |
2018787157 |
4.29 % |
| Clipped |
60165179 |
0.13 % |
| Overlapping |
5925189062 |
12.60 % |
| LowQuality |
556295493 |
1.18 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |