/EXTERNAL BLUEPRINT/methylation/K010502_1_lane_gembs

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SAMPLE K010502_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26402656 15920715 60.30 %
NonRefCpG 271406 129692 47.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010502_1_lane_gembs_coverage_refCpG.png ./IMG//K010502_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010502_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010502_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010502_1_lane_gembs_quality_refcpg.png ./IMG//K010502_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010502_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5321774 10.37 % 1496803 4.22 % 57661 11.28 % 9308 3.06 %
Intermediate (0.3-0.7) 10793280 21.03 % 5885946 16.61 % 118310 23.15 % 50972 16.78 %
Methylated (0.7-1) 35201691 68.60 % 28046044 79.16 % 335052 65.56 % 243439 80.15 %
Median Methylation 0.820 0.860 0.810 0.870