/EXTERNAL BLUEPRINT/K006348_9_lane_gembs

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SAMPLE K006348_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1014422458 100.00 % 507211229 100.00 % 507211229 100.00 %
General Reads 977437387 96.35 % 490365405 96.68 % 487071982 96.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13115395 1.29 % 6573112 1.30 % 6542283 1.29 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23869676 2.35 % 10272712 2.03 % 13596964 2.68 %
Bisulfite_reads C2T 522308936 51.49 % 262060662 51.67 % 260248274 51.31 %
Bisulfite_reads G2A 468243846 46.16 % 234877855 46.31 % 233365991 46.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 398415193
Average Unique 78.55 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36851277948 35.62 % 14546628076 28.12 % 22304649872 43.11 %
Base Counts Overall C 14380800009 13.90 % 738473046 1.43 % 13642326963 26.37 %
Base Counts Overall G 14499521245 14.01 % 13779868290 26.64 % 719652955 1.39 %
Base Counts Overall T 36688386683 35.46 % 22156244525 42.83 % 14532142158 28.09 %
Base Counts Overall N 1051104831 1.02 % 514331421 0.99 % 536773410 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994858359643762
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 479073423



Mapping Quality

Mapping Quality Histogram
K006348_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006348_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
PB130513.Bisulfite-Seq.DNA_Methylation.EGAX00001290287_9