/EXTERNAL BLUEPRINT/mapping_coverage/K006348_9_lane_gembs
BACK
SAMPLE K006348_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
969703593 |
100% |
84005698030 |
100% |
| Mapped |
960084636 |
99.01 % |
83034183373 |
98.84 % |
| Passed |
776816066 |
80.11 % |
64524057803 |
76.81 % |
| NotPassed |
183268570 |
18.90 % |
18510125570 |
22.03 % |
| |
|
|
|
|
| LowMAPQ |
161659262 |
16.67 % |
16327585462 |
19.44 % |
| MateUnmapped |
9618957 |
0.99 % |
971514657 |
1.16 % |
| Duplicate |
7747286 |
0.80 % |
782475886 |
0.93 % |
| BadOrientation |
36 |
0.00 % |
3636 |
0.00 % |
| LargeInsertSize |
13204 |
0.00 % |
1333604 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13848782 |
1.43 % |
1398726982 |
1.67 % |
| Unmapped |
9618957 |
0.99 % |
971514657 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78454272576 |
100% |
| Passed |
60635299820 |
77.29 % |
| Trimmed |
3276320172 |
4.18 % |
| Clipped |
87923519 |
0.11 % |
| Overlapping |
13842291254 |
17.64 % |
| LowQuality |
612437811 |
0.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |