/EXTERNAL BLUEPRINT/methylation/K006348_9_lane_gembs

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SAMPLE K006348_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26571457 19711887 74.18 %
NonRefCpG 336564 148200 44.03 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006348_9_lane_gembs_coverage_refCpG.png ./IMG//K006348_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006348_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006348_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006348_9_lane_gembs_quality_refcpg.png ./IMG//K006348_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006348_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6138433 13.23 % 4355264 11.49 % 110128 19.65 % 29125 9.04 %
Intermediate (0.3-0.7) 7170452 15.45 % 4600363 12.14 % 126290 22.53 % 52085 16.16 %
Methylated (0.7-1) 33105964 71.33 % 28941683 76.37 % 324117 57.82 % 241137 74.81 %
Median Methylation 0.850 0.870 0.770 0.860