/EXTERNAL BLUEPRINT/K006393_K006406_19_lane_gembs

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SAMPLE K006393_K006406_19_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1996817460 100.00 % 998408730 100.00 % 998408730 100.00 %
General Reads 1909333448 95.62 % 958251655 95.98 % 951081793 95.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 42412891 2.12 % 21265647 2.13 % 21147244 2.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 45071121 2.26 % 18891428 1.89 % 26179693 2.62 %
Bisulfite_reads C2T 1015073589 50.83 % 509443041 51.03 % 505630548 50.64 %
Bisulfite_reads G2A 936672750 46.91 % 470074261 47.08 % 466598489 46.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 798818911
Average Unique 80.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74825660281 36.74 % 29374828007 28.84 % 45450832274 44.63 %
Base Counts Overall C 26134036036 12.83 % 1373349015 1.35 % 24760687021 24.31 %
Base Counts Overall G 26345188120 12.93 % 25013327457 24.56 % 1331860663 1.31 %
Base Counts Overall T 74263736501 36.46 % 45049498093 44.24 % 29214238408 28.69 %
Base Counts Overall N 2106759982 1.03 % 1026687888 1.01 % 1080072094 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991519099121827
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 943409578



Mapping Quality

Mapping Quality Histogram
K006393_K006406_19_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006393_K006406_19_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345078_8
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345064_11