/EXTERNAL BLUEPRINT/K006393_K006406_19_lane_gembs/UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345064_11

BACK

SAMPLE K006393_K006406_19_lane_gembs LANE UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345064_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1136782242 100.00 % 568391121 100.00 % 568391121 100.00 %
General Reads 1069073105 94.04 % 536268375 94.35 % 532804730 93.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 37581155 3.31 % 18841004 3.31 % 18740151 3.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30127982 2.65 % 13281742 2.34 % 16846240 2.96 %
Bisulfite_reads C2T 582485976 51.24 % 292216884 51.41 % 290269092 51.07 %
Bisulfite_reads G2A 524168284 46.11 % 262892495 46.25 % 261275789 45.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 441496242
Average Unique 77.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40990333385 35.35 % 16398390776 28.28 % 24591942609 42.42 %
Base Counts Overall C 16474719802 14.21 % 940790687 1.62 % 15533929115 26.79 %
Base Counts Overall G 16614468227 14.33 % 15695843107 27.07 % 918625120 1.58 %
Base Counts Overall T 40672021871 35.08 % 24360331650 42.02 % 16311690221 28.14 %
Base Counts Overall N 1200245399 1.04 % 580538122 1.00 % 619707277 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991734911506086
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 533605051



Mapping Quality

Mapping Quality Histogram
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345064_11.mapq.png



Read Length

Read Length Reads
101 568391121
101 568391121



Insert Size Plot

Insert Size Histogram
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345064_11.isize.png