/EXTERNAL BLUEPRINT/K006393_K006406_19_lane_gembs/UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345078_8

BACK

SAMPLE K006393_K006406_19_lane_gembs LANE UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345078_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 860035218 100.00 % 430017609 100.00 % 430017609 100.00 %
General Reads 840260343 97.70 % 421983280 98.13 % 418277063 97.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4831736 0.56 % 2424643 0.56 % 2407093 0.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14943139 1.74 % 5609686 1.30 % 9333453 2.17 %
Bisulfite_reads C2T 432587613 50.30 % 217226157 50.52 % 215361456 50.08 %
Bisulfite_reads G2A 412504466 47.96 % 207181766 48.18 % 205322700 47.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 357322669
Average Unique 83.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33835326896 38.57 % 12976437231 29.58 % 20858889665 47.56 %
Base Counts Overall C 9659316234 11.01 % 432558328 0.99 % 9226757906 21.04 %
Base Counts Overall G 9730719893 11.09 % 9317484350 21.24 % 413235543 0.94 %
Base Counts Overall T 33591714630 38.29 % 20689166443 47.17 % 12902548187 29.42 %
Base Counts Overall N 906514583 1.03 % 446149766 1.02 % 460364817 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989733699695124
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 409804527



Mapping Quality

Mapping Quality Histogram
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345078_8.mapq.png



Read Length

Read Length Reads
101 430017609
101 430017609



Insert Size Plot

Insert Size Histogram
UMCG00026.Bisulfite-Seq.DNA_Methylation.EGAX00001345078_8.isize.png