/EXTERNAL BLUEPRINT/mapping_coverage/K006393_K006406_19_lane_gembs
BACK
SAMPLE K006393_K006406_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1894799653 |
100% |
172714464294 |
100% |
| Mapped |
1875555146 |
98.98 % |
170770769087 |
98.87 % |
| Passed |
1540554087 |
81.30 % |
136935662128 |
79.28 % |
| NotPassed |
335001059 |
17.68 % |
33835106959 |
19.59 % |
| |
|
|
|
|
| LowMAPQ |
287791092 |
15.19 % |
29066900292 |
16.83 % |
| MateUnmapped |
19244507 |
1.02 % |
1943695207 |
1.13 % |
| Duplicate |
14556708 |
0.77 % |
1470227508 |
0.85 % |
| BadOrientation |
42 |
0.00 % |
4242 |
0.00 % |
| LargeInsertSize |
26530 |
0.00 % |
2679530 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
32626687 |
1.72 % |
3295295387 |
1.91 % |
| Unmapped |
19244507 |
1.02 % |
1943695207 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
155585952576 |
100% |
| Passed |
128764167115 |
82.76 % |
| Trimmed |
6737617459 |
4.33 % |
| Clipped |
172125434 |
0.11 % |
| Overlapping |
18478165014 |
11.88 % |
| LowQuality |
1433877554 |
0.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |