/EXTERNAL BLUEPRINT/methylation/K006393_K006406_19_lane_gembs
BACK
SAMPLE K006393_K006406_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26921338 |
25022170 |
92.95 % |
| NonRefCpG |
255930 |
196399 |
76.74 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5600550 |
10.54 % |
5144949 |
10.16 % |
38505 |
7.92 % |
19463 |
4.80 % |
| Intermediate (0.3-0.7) |
5311162 |
9.99 % |
4646713 |
9.18 % |
64444 |
13.25 % |
41609 |
10.26 % |
| Methylated (0.7-1) |
42232641 |
79.47 % |
40823179 |
80.65 % |
383337 |
78.83 % |
344611 |
84.95 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.900 |
|
0.910 |
|
0.890 |
|
0.910 |
|