/EXTERNAL BLUEPRINT/K006388_K006401_24_lane_gembs/UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345059_14

BACK

SAMPLE K006388_K006401_24_lane_gembs LANE UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345059_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1125731728 100.00 % 562865864 100.00 % 562865864 100.00 %
General Reads 1078290476 95.79 % 540667463 96.06 % 537623013 95.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20850630 1.85 % 10445596 1.86 % 10405034 1.85 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26590622 2.36 % 11752805 2.09 % 14837817 2.64 %
Bisulfite_reads C2T 577361240 51.29 % 289525790 51.44 % 287835450 51.14 %
Bisulfite_reads G2A 521779866 46.35 % 261587269 46.47 % 260192597 46.23 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 436044823
Average Unique 77.47 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40253578296 35.06 % 16267904750 28.34 % 23985673546 41.78 %
Base Counts Overall C 16306916099 14.20 % 908417345 1.58 % 15398498754 26.82 %
Base Counts Overall G 16610820507 14.47 % 15723852044 27.39 % 886968463 1.54 %
Base Counts Overall T 40143319575 34.96 % 23944815079 41.71 % 16198504496 28.21 %
Base Counts Overall N 1510001779 1.32 % 567328910 0.99 % 942672869 1.64 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991278510028322
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 529475217



Mapping Quality

Mapping Quality Histogram
UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345059_14.mapq.png



Read Length

Read Length Reads
101 562865864
101 562865864



Insert Size Plot

Insert Size Histogram
UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345059_14.isize.png