/EXTERNAL BLUEPRINT/K006388_K006401_24_lane_gembs/UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345073_10

BACK

SAMPLE K006388_K006401_24_lane_gembs LANE UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345073_10

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 859762254 100.00 % 429881127 100.00 % 429881127 100.00 %
General Reads 839758793 97.67 % 421244314 97.99 % 418514479 97.36 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4581581 0.53 % 2296261 0.53 % 2285320 0.53 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15421880 1.79 % 6340552 1.47 % 9081328 2.11 %
Bisulfite_reads C2T 431953418 50.24 % 216664346 50.40 % 215289072 50.08 %
Bisulfite_reads G2A 412386956 47.97 % 206876229 48.12 % 205510727 47.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 359414046
Average Unique 83.61 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33896111359 38.65 % 13023032146 29.70 % 20873079213 47.60 %
Base Counts Overall C 9524436981 10.86 % 445610192 1.02 % 9078826789 20.71 %
Base Counts Overall G 9602183209 10.95 % 9176947131 20.93 % 425236078 0.97 %
Base Counts Overall T 33798246974 38.54 % 20766605862 47.36 % 13031641112 29.72 %
Base Counts Overall N 874771385 1.00 % 435679623 0.99 % 439091762 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988231278744102
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 411144218



Mapping Quality

Mapping Quality Histogram
UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345073_10.mapq.png



Read Length

Read Length Reads
101 429881127
101 429881127



Insert Size Plot

Insert Size Histogram
UMCG00005.Bisulfite-Seq.DNA_Methylation.EGAX00001345073_10.isize.png