/EXTERNAL BLUEPRINT/mapping_coverage/K006388_K006401_24_lane_gembs
BACK
SAMPLE K006388_K006401_24_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1900649879 |
100% |
171844099885 |
100% |
| Mapped |
1883453096 |
99.10 % |
170107224802 |
98.99 % |
| Passed |
1545237757 |
81.30 % |
135947475563 |
79.11 % |
| NotPassed |
338215339 |
17.79 % |
34159749239 |
19.88 % |
| |
|
|
|
|
| LowMAPQ |
289636120 |
15.24 % |
29253248120 |
17.02 % |
| MateUnmapped |
17196783 |
0.90 % |
1736875083 |
1.01 % |
| Duplicate |
17427015 |
0.92 % |
1760128515 |
1.02 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
36420 |
0.00 % |
3678420 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31115738 |
1.64 % |
3142689538 |
1.83 % |
| Unmapped |
17196783 |
0.90 % |
1736875083 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
156059044050 |
100% |
| Passed |
127857098409 |
81.93 % |
| Trimmed |
6735999403 |
4.32 % |
| Clipped |
423766366 |
0.27 % |
| Overlapping |
19687802121 |
12.62 % |
| LowQuality |
1354377751 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |