/EXTERNAL BLUEPRINT/K006325_15_lane_gembs/S004P1.Bisulfite-Seq.DNA_Methylation.EGAX00001236259_15

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SAMPLE K006325_15_lane_gembs LANE S004P1.Bisulfite-Seq.DNA_Methylation.EGAX00001236259_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1267973550 100.00 % 633986775 100.00 % 633986775 100.00 %
General Reads 1227040735 96.77 % 615472488 97.08 % 611568247 96.46 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20261165 1.60 % 10149026 1.60 % 10112139 1.60 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20671650 1.63 % 8365261 1.32 % 12306389 1.94 %
Bisulfite_reads C2T 655805357 51.72 % 328988768 51.89 % 326816589 51.55 %
Bisulfite_reads G2A 591496543 46.65 % 296632746 46.79 % 294863797 46.51 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 490529309
Average Unique 77.37 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45379261374 35.09 % 18185410530 28.12 % 27193850844 42.05 %
Base Counts Overall C 18594667779 14.38 % 856961780 1.33 % 17737705999 27.43 %
Base Counts Overall G 18812258604 14.55 % 17972872653 27.79 % 839385951 1.30 %
Base Counts Overall T 45166692745 34.92 % 27011989760 41.77 % 18154702985 28.07 %
Base Counts Overall N 1380421598 1.07 % 639416327 0.99 % 741005271 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99936593056455
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 599005121



Mapping Quality

Mapping Quality Histogram
S004P1.Bisulfite-Seq.DNA_Methylation.EGAX00001236259_15.mapq.png



Read Length

Read Length Reads
101 633986775
101 633986775



Insert Size Plot

Insert Size Histogram
S004P1.Bisulfite-Seq.DNA_Methylation.EGAX00001236259_15.isize.png