/EXTERNAL BLUEPRINT/mapping_coverage/K006325_15_lane_gembs
BACK
SAMPLE K006325_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1210396540 |
100% |
104587949210 |
100% |
| Mapped |
1198357327 |
99.01 % |
103371988697 |
98.84 % |
| Passed |
939156023 |
77.59 % |
77192656993 |
73.81 % |
| NotPassed |
259201304 |
21.41 % |
26179331704 |
25.03 % |
| |
|
|
|
|
| LowMAPQ |
221713168 |
18.32 % |
22393029968 |
21.41 % |
| MateUnmapped |
12039213 |
0.99 % |
1215960513 |
1.16 % |
| Duplicate |
16683860 |
1.38 % |
1685069860 |
1.61 % |
| BadOrientation |
86 |
0.00 % |
8686 |
0.00 % |
| LargeInsertSize |
34112 |
0.00 % |
3445312 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20770078 |
1.72 % |
2097777878 |
2.01 % |
| Unmapped |
12039213 |
0.99 % |
1215960513 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
94849343208 |
100% |
| Passed |
72590445593 |
76.53 % |
| Trimmed |
3925760697 |
4.14 % |
| Clipped |
133620058 |
0.14 % |
| Overlapping |
17523066157 |
18.47 % |
| LowQuality |
676450703 |
0.71 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |