/EXTERNAL BLUEPRINT/methylation/K006325_15_lane_gembs

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SAMPLE K006325_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26369632 17359480 65.83 %
NonRefCpG 325808 119337 36.63 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006325_15_lane_gembs_coverage_refCpG.png ./IMG//K006325_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006325_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006325_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006325_15_lane_gembs_quality_refcpg.png ./IMG//K006325_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006325_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7463597 16.54 % 4792365 13.88 % 120543 22.71 % 32324 11.73 %
Intermediate (0.3-0.7) 10173960 22.54 % 6060370 17.56 % 147820 27.85 % 59137 21.45 %
Methylated (0.7-1) 27495932 60.92 % 23665291 68.56 % 262422 49.44 % 184173 66.82 %
Median Methylation 0.790 0.840 0.690 0.820