/EXTERNAL BLUEPRINT/K006340_12_lane_gembs/BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290187_12

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SAMPLE K006340_12_lane_gembs LANE BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290187_12

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1125882996 100.00 % 562941498 100.00 % 562941498 100.00 %
General Reads 1064541176 94.55 % 534474091 94.94 % 530067085 94.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22933261 2.04 % 11504071 2.04 % 11429190 2.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38408559 3.41 % 16963336 3.01 % 21445223 3.81 %
Bisulfite_reads C2T 569534180 50.59 % 285932932 50.79 % 283601248 50.38 %
Bisulfite_reads G2A 517940257 46.00 % 260045230 46.19 % 257895027 45.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 440469331
Average Unique 78.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40975689714 35.68 % 16028472453 27.91 % 24947217261 43.45 %
Base Counts Overall C 15822219127 13.78 % 976867719 1.70 % 14845351408 25.85 %
Base Counts Overall G 16081980380 14.00 % 15128883965 26.35 % 953096415 1.66 %
Base Counts Overall T 40802119751 35.53 % 24712727751 43.04 % 16089392000 28.02 %
Base Counts Overall N 1158056620 1.01 % 573080908 1.00 % 584975712 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991384244578755
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 526346477



Mapping Quality

Mapping Quality Histogram
BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290187_12.mapq.png



Read Length

Read Length Reads
101 562941498
101 562941498



Insert Size Plot

Insert Size Histogram
BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290187_12.isize.png