/EXTERNAL BLUEPRINT/K006380_15_lane_gembs/15548.Bisulfite-Seq.DNA_Methylation.EGAX00001343014_15

BACK

SAMPLE K006380_15_lane_gembs LANE 15548.Bisulfite-Seq.DNA_Methylation.EGAX00001343014_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1380212734 100.00 % 690106367 100.00 % 690106367 100.00 %
General Reads 1349263833 97.76 % 677037414 98.11 % 672226419 97.41 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5378113 0.39 % 2697294 0.39 % 2680819 0.39 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25570788 1.85 % 10371659 1.50 % 15199129 2.20 %
Bisulfite_reads C2T 695192304 50.37 % 348822155 50.55 % 346370149 50.19 %
Bisulfite_reads G2A 659449642 47.78 % 330912553 47.95 % 328537089 47.61 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 570991094
Average Unique 82.74 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 54857779843 38.97 % 20895851431 29.69 % 33961928412 48.25 %
Base Counts Overall C 14983768945 10.64 % 393662963 0.56 % 14590105982 20.73 %
Base Counts Overall G 15122787350 10.74 % 14744369029 20.95 % 378418321 0.54 %
Base Counts Overall T 54417103585 38.65 % 33657746905 47.82 % 20759356680 29.49 %
Base Counts Overall N 1400259145 0.99 % 699219106 0.99 % 701040039 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991299766612943
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 659433094



Mapping Quality

Mapping Quality Histogram
15548.Bisulfite-Seq.DNA_Methylation.EGAX00001343014_15.mapq.png



Read Length

Read Length Reads
101 690106367
101 690106367



Insert Size Plot

Insert Size Histogram
15548.Bisulfite-Seq.DNA_Methylation.EGAX00001343014_15.isize.png