/EXTERNAL BLUEPRINT/mapping_coverage/K006380_15_lane_gembs
BACK
SAMPLE K006380_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1346227661 |
100% |
123189587465 |
100% |
| Mapped |
1333803685 |
99.08 % |
121934765889 |
98.98 % |
| Passed |
1138865560 |
84.60 % |
102246015264 |
83.00 % |
| NotPassed |
194938125 |
14.48 % |
19688750625 |
15.98 % |
| |
|
|
|
|
| LowMAPQ |
172454696 |
12.81 % |
17417924296 |
14.14 % |
| MateUnmapped |
12423976 |
0.92 % |
1254821576 |
1.02 % |
| Duplicate |
3037052 |
0.23 % |
306742252 |
0.25 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
5392 |
0.00 % |
544592 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19440971 |
1.44 % |
1963538071 |
1.59 % |
| Unmapped |
12423976 |
0.92 % |
1254821576 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
115017245206 |
100% |
| Passed |
96029680445 |
83.49 % |
| Trimmed |
5010050709 |
4.36 % |
| Clipped |
133027909 |
0.12 % |
| Overlapping |
12638202033 |
10.99 % |
| LowQuality |
1206284110 |
1.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |