/EXTERNAL BLUEPRINT/methylation/K006380_15_lane_gembs

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SAMPLE K006380_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26892880 23457100 87.22 %
NonRefCpG 248242 182949 73.70 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006380_15_lane_gembs_coverage_refCpG.png ./IMG//K006380_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006380_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006380_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006380_15_lane_gembs_quality_refcpg.png ./IMG//K006380_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006380_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 26025689 49.02 % 23729840 48.70 % 255723 53.41 % 209476 53.66 %
Intermediate (0.3-0.7) 10028299 18.89 % 8813803 18.09 % 96787 20.21 % 71313 18.27 %
Methylated (0.7-1) 17037115 32.09 % 16181752 33.21 % 126293 26.38 % 109597 28.07 %
Median Methylation 0.320 0.330 0.260 0.250