/EXTERNAL BLUEPRINT/K010506_1_lane_gembs

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SAMPLE K010506_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 687076694 100.00 % 343538347 100.00 % 343538347 100.00 %
General Reads 669980265 97.51 % 336351754 97.91 % 333628511 97.12 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3245240 0.47 % 1627052 0.47 % 1618188 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13851189 2.02 % 5559541 1.62 % 8291648 2.41 %
Bisulfite_reads C2T 345386705 50.27 % 173386147 50.47 % 172000558 50.07 %
Bisulfite_reads G2A 327838800 47.72 % 164592659 47.91 % 163246141 47.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 281212424
Average Unique 81.86 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 27075807054 38.63 % 10423390622 29.75 % 16652416432 47.52 %
Base Counts Overall C 7559043207 10.79 % 362202287 1.03 % 7196840920 20.54 %
Base Counts Overall G 7640111732 10.90 % 7296041981 20.82 % 344069751 0.98 %
Base Counts Overall T 27087645082 38.65 % 16611895681 47.41 % 10475749401 29.90 %
Base Counts Overall N 719215713 1.03 % 347380823 0.99 % 371834890 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991714153609008
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 325069443



Mapping Quality

Mapping Quality Histogram
K010506_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010506_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010506_1798748_2