/EXTERNAL BLUEPRINT/methylation/K010506_1_lane_gembs

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SAMPLE K010506_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26559265 19328785 72.78 %
NonRefCpG 265476 159463 60.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010506_1_lane_gembs_coverage_refCpG.png ./IMG//K010506_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010506_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010506_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010506_1_lane_gembs_quality_refcpg.png ./IMG//K010506_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010506_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5399191 10.38 % 2561545 6.13 % 47218 9.40 % 11651 3.30 %
Intermediate (0.3-0.7) 9448755 18.16 % 6480668 15.51 % 103509 20.61 % 56001 15.84 %
Methylated (0.7-1) 37168414 71.46 % 32746201 78.36 % 351595 69.99 % 285931 80.87 %
Median Methylation 0.840 0.860 0.830 0.870