/EXTERNAL BLUEPRINT/K006358_10_lane_gembs

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SAMPLE K006358_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1104049288 100.00 % 552024644 100.00 % 552024644 100.00 %
General Reads 1059248058 95.94 % 531135255 96.22 % 528112803 95.67 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19038402 1.72 % 9537182 1.73 % 9501220 1.72 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25762828 2.33 % 11352207 2.06 % 14410621 2.61 %
Bisulfite_reads C2T 562068233 50.91 % 281833626 51.05 % 280234607 50.76 %
Bisulfite_reads G2A 516218227 46.76 % 258838811 46.89 % 257379416 46.62 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 440525023
Average Unique 79.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40853962346 36.28 % 15830379604 28.11 % 25023582742 44.44 %
Base Counts Overall C 14950917805 13.28 % 807846515 1.43 % 14143071290 25.12 %
Base Counts Overall G 15179107869 13.48 % 14399527085 25.57 % 779580784 1.38 %
Base Counts Overall T 40503597512 35.97 % 24713464627 43.89 % 15790132885 28.04 %
Base Counts Overall N 1125441844 1.00 % 555295857 0.99 % 570145987 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990519463563581
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 523184129



Mapping Quality

Mapping Quality Histogram
K006358_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006358_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300957_10