/EXTERNAL BLUEPRINT/mapping_coverage/K006358_10_lane_gembs
BACK
SAMPLE K006358_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1045721092 |
100% |
92260522768 |
100% |
| Mapped |
1036195167 |
99.09 % |
91298404343 |
98.96 % |
| Passed |
843784456 |
80.69 % |
71864922532 |
77.89 % |
| NotPassed |
192410711 |
18.40 % |
19433481811 |
21.06 % |
| |
|
|
|
|
| LowMAPQ |
164946838 |
15.77 % |
16659630638 |
18.06 % |
| MateUnmapped |
9525925 |
0.91 % |
962118425 |
1.04 % |
| Duplicate |
13551382 |
1.30 % |
1368689582 |
1.48 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
10634 |
0.00 % |
1074034 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13901827 |
1.33 % |
1404084527 |
1.52 % |
| Unmapped |
9525925 |
0.91 % |
962118425 |
1.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
85217064411 |
100% |
| Passed |
67636577968 |
79.37 % |
| Trimmed |
3598684588 |
4.22 % |
| Clipped |
93054750 |
0.11 % |
| Overlapping |
13259087129 |
15.56 % |
| LowQuality |
629659976 |
0.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |