/EXTERNAL BLUEPRINT/methylation/K006358_10_lane_gembs

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SAMPLE K006358_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26706969 21286172 79.70 %
NonRefCpG 318810 162661 51.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006358_10_lane_gembs_coverage_refCpG.png ./IMG//K006358_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006358_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006358_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006358_10_lane_gembs_quality_refcpg.png ./IMG//K006358_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006358_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6385799 13.09 % 4836556 11.49 % 100815 18.11 % 31466 8.74 %
Intermediate (0.3-0.7) 7305047 14.98 % 5209595 12.38 % 118467 21.28 % 57623 16.00 %
Methylated (0.7-1) 35083520 71.93 % 32035563 76.13 % 337538 60.62 % 271130 75.27 %
Median Methylation 0.860 0.870 0.800 0.870