{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 52281831, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42756518, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 81.78, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 45247013, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 44797285, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.01, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 34444381, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7550337, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.219204
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 35683576, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 4842261, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.1357
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 34442930, 
            "distinct_read_pairs": 27043549, 
            "one_read_pair": 21095371, 
            "two_read_pair": 4770464, 
            "NRF": 0.78517, 
            "PBC1": 0.780052, 
            "PBC2": 4.422079
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 35670132, 
            "distinct_read_pairs": 31004601, 
            "one_read_pair": 26939275, 
            "two_read_pair": 3576837, 
            "NRF": 0.869203, 
            "PBC1": 0.86888, 
            "PBC2": 7.531591
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 26894044, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 26894044, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 30841315, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 30841315, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 71664, 
        "Np": 0, 
        "N_opt": 71664, 
        "N_consv": 71664, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.17115764912353, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1698079, 
            "argmin_corr": 1500, 
            "min_corr": 0.1555197, 
            "NSC": 1.100553, 
            "RSC": 1.094469
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.215223123366
        }, 
        "rep1-pr1": {
            "FRiP": 0.180365946937
        }, 
        "rep1-pr2": {
            "FRiP": 0.18060496851
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.174654528674
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.242915747593, 
            "auc": 0.489540440992, 
            "ch_div": 0.152001103616, 
            "elbow_pt": 1.63899425456e-77, 
            "jsd": 0.645549348827, 
            "syn_auc": 0.519270921138, 
            "syn_elbow_pt": 0.168528312464, 
            "syn_jsd": 0.309539259161
        }
    ]
}
