/EXTERNAL BLUEPRINT/K006418_14_lane_gembs

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SAMPLE K006418_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1188653328 100.00 % 594326664 100.00 % 594326664 100.00 %
General Reads 1162089599 97.77 % 583533505 98.18 % 578556094 97.35 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3148706 0.26 % 1579532 0.27 % 1569174 0.26 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23415023 1.97 % 9213627 1.55 % 14201396 2.39 %
Bisulfite_reads C2T 597557671 50.27 % 300032926 50.48 % 297524745 50.06 %
Bisulfite_reads G2A 567680634 47.76 % 285080111 47.97 % 282600523 47.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 491735667
Average Unique 82.74 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46933742262 38.71 % 18047142364 29.77 % 28886599898 47.65 %
Base Counts Overall C 13154283489 10.85 % 539465154 0.89 % 12614818335 20.81 %
Base Counts Overall G 13146981656 10.84 % 12629640208 20.83 % 517341448 0.85 %
Base Counts Overall T 46746049840 38.56 % 28807279645 47.52 % 17938770195 29.59 %
Base Counts Overall N 1261582209 1.04 % 597792357 0.99 % 663789852 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990224055263172
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 566519059



Mapping Quality

Mapping Quality Histogram
K006418_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006418_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
1525CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364653_14