/EXTERNAL BLUEPRINT/mapping_coverage/K006418_14_lane_gembs
BACK
SAMPLE K006418_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1156910617 |
100% |
107071901991 |
100% |
| Mapped |
1145378842 |
99.00 % |
105907192716 |
98.91 % |
| Passed |
976956116 |
84.45 % |
88896497390 |
83.03 % |
| NotPassed |
168422726 |
14.56 % |
17010695326 |
15.89 % |
| |
|
|
|
|
| LowMAPQ |
145323172 |
12.56 % |
14677640372 |
13.71 % |
| MateUnmapped |
11531775 |
1.00 % |
1164709275 |
1.09 % |
| Duplicate |
5180198 |
0.45 % |
523199998 |
0.49 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
5370 |
0.00 % |
542370 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17913978 |
1.55 % |
1809311778 |
1.69 % |
| Unmapped |
11531775 |
1.00 % |
1164709275 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98663297835 |
100% |
| Passed |
83418129380 |
84.55 % |
| Trimmed |
4341692014 |
4.40 % |
| Clipped |
120064301 |
0.12 % |
| Overlapping |
9646736144 |
9.78 % |
| LowQuality |
1136675996 |
1.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |