/EXTERNAL BLUEPRINT/methylation/K006418_14_lane_gembs

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SAMPLE K006418_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26849697 23472808 87.42 %
NonRefCpG 256991 190137 73.99 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006418_14_lane_gembs_coverage_refCpG.png ./IMG//K006418_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006418_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006418_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006418_14_lane_gembs_quality_refcpg.png ./IMG//K006418_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006418_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11592895 21.89 % 10026316 20.66 % 99452 20.28 % 71085 17.78 %
Intermediate (0.3-0.7) 9698855 18.32 % 8418487 17.35 % 103287 21.06 % 75176 18.80 %
Methylated (0.7-1) 31658259 59.79 % 30086266 61.99 % 287688 58.66 % 253553 63.42 %
Median Methylation 0.810 0.820 0.790 0.830