{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 31745362, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 28166659, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 88.73, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 40728121, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40249936, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.83, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 23662371, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3868125, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.163472
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 32042361, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 595541, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.018586
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 23660722, 
            "distinct_read_pairs": 19897023, 
            "one_read_pair": 16687490, 
            "two_read_pair": 2734648, 
            "NRF": 0.840931, 
            "PBC1": 0.838693, 
            "PBC2": 6.102244
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 32024608, 
            "distinct_read_pairs": 31450111, 
            "one_read_pair": 30919652, 
            "two_read_pair": 519027, 
            "NRF": 0.982061, 
            "PBC1": 0.983133, 
            "PBC2": 59.572338
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 19794246, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 19794246, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 31446820, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31446820, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 77500, 
        "Np": 0, 
        "N_opt": 77500, 
        "N_consv": 77500, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.225863701292305, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.209231, 
            "argmin_corr": 1500, 
            "min_corr": 0.1784368, 
            "NSC": 1.265791, 
            "RSC": 1.540125
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.446969723379
        }, 
        "rep1-pr1": {
            "FRiP": 0.428805235001
        }, 
        "rep1-pr2": {
            "FRiP": 0.428806086699
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.403879840119
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.136312713261, 
            "auc": 0.487805165734, 
            "ch_div": 0.294063665844, 
            "elbow_pt": 9.23254877992e-57, 
            "jsd": 0.800313490905, 
            "syn_auc": 0.490945121841, 
            "syn_elbow_pt": 0.360797912849, 
            "syn_jsd": 0.465827035842
        }
    ]
}
